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  5. Seita.1G327400.1

Seita.1G327400.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0005080 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005080_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G327400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_64


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 82 281
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 462 496
IPR002885 Pentatricopeptide_rpt NCBIfam 220 244
IPR002885 Pentatricopeptide_rpt NCBIfam 394 428
IPR002885 Pentatricopeptide_rpt NCBIfam 252 284
IPR002885 Pentatricopeptide_rpt NCBIfam 286 316
IPR002885 Pentatricopeptide_rpt NCBIfam 429 460
IPR002885 Pentatricopeptide_rpt NCBIfam 465 495
IPR002885 Pentatricopeptide_rpt NCBIfam 325 358
IPR002885 Pentatricopeptide_rpt NCBIfam 360 393
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 392 426
IPR011990 TPR-like_helical_dom_sf Gene3D 289 407
IPR002885 Pentatricopeptide_rpt Pfam 391 435
IPR002885 Pentatricopeptide_rpt Pfam 321 369
IPR002885 Pentatricopeptide_rpt Pfam 250 296
IPR011990 TPR-like_helical_dom_sf Gene3D 408 546
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 215 245
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 249 283
IPR002885 Pentatricopeptide_rpt Pfam 465 492
IPR002885 Pentatricopeptide_rpt Pfam 220 245
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 427 461
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 322 356
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 357 391
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 284 318
IPR011990 TPR-like_helical_dom_sf Gene3D 408 546
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 427 461
IPR002885 Pentatricopeptide_rpt Pfam 345 403
IPR011990 TPR-like_helical_dom_sf Gene3D 82 281
IPR011990 TPR-like_helical_dom_sf Gene3D 289 407
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 322 356
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 284 318
IPR002885 Pentatricopeptide_rpt Pfam 426 473
IPR002885 Pentatricopeptide_rpt Pfam 283 335
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 462 496
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 357 391
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 215 245
IPR002885 Pentatricopeptide_rpt TIGRFAM 252 284
IPR002885 Pentatricopeptide_rpt TIGRFAM 465 495
IPR002885 Pentatricopeptide_rpt TIGRFAM 360 393
IPR002885 Pentatricopeptide_rpt TIGRFAM 394 428
IPR002885 Pentatricopeptide_rpt TIGRFAM 429 460
IPR002885 Pentatricopeptide_rpt TIGRFAM 220 244
IPR002885 Pentatricopeptide_rpt TIGRFAM 286 316
IPR002885 Pentatricopeptide_rpt TIGRFAM 325 358
IPR002885 Pentatricopeptide_rpt Pfam 220 245
IPR002885 Pentatricopeptide_rpt Pfam 252 279
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 392 426
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 249 283

No CAZYmes available for this sequence

No external refs found!