Sevir.6G052700.1

Description : FAD-binding Berberine family protein

Gene families : OG_01_0008062 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008062_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G052700.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G052700.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	ISM	GOs from InterProScan
MF	GO:0071949	FAD binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016169	FAD-bd_PCMH_sub2	Gene3D	139	534
IPR012951	BBE	Pfam	468	533
IPR016167	FAD-bd_PCMH_sub1	Gene3D	27	134
IPR006094	Oxid_FAD_bind_N	Pfam	78	217
IPR036318	FAD-bd_PCMH-like_sf	SUPERFAMILY	32	251
IPR016166	FAD-bd_PCMH	ProSiteProfiles	74	250
IPR016164	FAD-linked_Oxase-like_C	SUPERFAMILY	472	534

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA7	458	539	4.4e-84	76	532

External Links

No external refs found!