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  5. Seita.1G359500.1

Seita.1G359500.1


Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein


Gene families : OG_01_0008639 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008639_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G359500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003349 JmjN ProSiteProfiles 183 224
IPR004198 Znf_C5HC2 Pfam 633 684
IPR003888 FYrich_N Pfam 1023 1074
IPR003888 FYrich_N ProSiteProfiles 1017 1075
IPR003349 JmjN SMART 182 223
IPR003889 FYrich_C SMART 1081 1178
IPR003347 JmjC_dom ProSiteProfiles 378 544
IPR003349 JmjN Pfam 184 217
IPR003888 FYrich_N SMART 1031 1075
IPR003889 FYrich_C ProSiteProfiles 1077 1167
IPR003889 FYrich_C Pfam 1079 1167
IPR003347 JmjC_dom Pfam 411 527
IPR003347 JmjC_dom SMART 378 544
IPR003888 FYrich_N SMART 1031 1075
IPR004198 Znf_C5HC2 Pfam 633 683
IPR003888 FYrich_N Pfam 1024 1072
IPR003347 JmjC_dom SMART 378 544
IPR003889 FYrich_C SMART 1081 1178
IPR003888 FYrich_N ProSiteProfiles 1017 1075
IPR003349 JmjN ProSiteProfiles 183 224
IPR003889 FYrich_C Pfam 1079 1167
IPR003347 JmjC_dom ProSiteProfiles 378 544
IPR003349 JmjN SMART 182 223
IPR003347 JmjC_dom Pfam 411 527
IPR003889 FYrich_C ProSiteProfiles 1077 1167
IPR003349 JmjN Pfam 184 217

No CAZYmes available for this sequence

No external refs found!