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  5. Sevir.6G057200.1

Sevir.6G057200.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0013592 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013592_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G057200.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G057200.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_101


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 166 272
IPR011990 TPR-like_helical_dom_sf Gene3D 2 106
IPR011990 TPR-like_helical_dom_sf Gene3D 107 165
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 170 204
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 303 337
IPR002885 Pentatricopeptide_rpt Pfam 279 299
IPR002885 Pentatricopeptide_rpt Pfam 74 103
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 107 141
IPR032867 DYW_dom Pfam 476 600
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 124 459
IPR002885 Pentatricopeptide_rpt Pfam 302 349
IPR002885 Pentatricopeptide_rpt Pfam 201 248
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 282 457
IPR002885 Pentatricopeptide_rpt TIGRFAM 203 231
IPR002885 Pentatricopeptide_rpt TIGRFAM 110 135
IPR002885 Pentatricopeptide_rpt TIGRFAM 279 305
IPR002885 Pentatricopeptide_rpt TIGRFAM 173 203
IPR002885 Pentatricopeptide_rpt TIGRFAM 305 339
IPR002885 Pentatricopeptide_rpt TIGRFAM 378 401
IPR002885 Pentatricopeptide_rpt TIGRFAM 78 107
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 272 302
IPR011990 TPR-like_helical_dom_sf Gene3D 278 517
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 76 106
IPR002885 Pentatricopeptide_rpt Pfam 140 163
IPR002885 Pentatricopeptide_rpt Pfam 110 136
IPR002885 Pentatricopeptide_rpt Pfam 377 401

No CAZYmes available for this sequence

No external refs found!