Sevir.6G057700.2

Description : BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)

Gene families : OG_01_0000310 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000310_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G057700.2	No neighbors in network
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G057700.2
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_69

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006351	DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR035925	BSD_dom_sf	Gene3D	175	268
IPR027079	Tfb1/GTF2H1	PANTHER	17	602
IPR011993	PH-like_dom_sf	Gene3D	16	114
IPR005607	BSD_dom	Pfam	211	260
IPR035925	BSD_dom_sf	SUPERFAMILY	131	176
IPR005607	BSD_dom	SMART	205	257
IPR005607	BSD_dom	SMART	127	181
IPR035925	BSD_dom_sf	SUPERFAMILY	208	259
IPR013876	TFIIH_BTF_p62_N	Pfam	25	103
IPR005607	BSD_dom	ProSiteProfiles	137	181
IPR005607	BSD_dom	ProSiteProfiles	205	257

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.6G057700.2

Expression Profile

Co-expression Networks

Functional Annotation