Seita.2G044000.1

Description : NUP50 (Nucleoporin 50 kDa) protein

Gene families : OG_01_0003515 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003515_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G044000.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0046907	intracellular transport	ISM	GOs from InterProScan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000156	Ran_bind_dom	Pfam	316	432
IPR045207	RanBD_NUP50_plant	CDD	318	432
IPR015007	NUP2/50/61	Pfam	11	70
IPR000156	Ran_bind_dom	ProSiteProfiles	316	429
IPR011993	PH-like_dom_sf	Gene3D	254	431
IPR000156	Ran_bind_dom	SMART	306	431
IPR045255	RanBP1-like	PANTHER	38	443
IPR045207	RanBD_NUP50_plant	CDD	318	432
IPR000156	Ran_bind_dom	Pfam	316	432
IPR000156	Ran_bind_dom	ProSiteProfiles	316	429
IPR011993	PH-like_dom_sf	Gene3D	254	431
IPR000156	Ran_bind_dom	SMART	306	431
IPR015007	NUP2/50/61	Pfam	12	70
IPR045255	RanBP1-like	PANTHER	174	451
IPR045255	RanBP1-like	PANTHER	1	178

No CAZYmes available for this sequence

External Links

No external refs found!