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  5. Seita.2G070900.1

Seita.2G070900.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0002159 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002159_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G070900.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 108 185
IPR000504 RRM_dom SMART 9 80
IPR000504 RRM_dom SMART 109 181
IPR000504 RRM_dom ProSiteProfiles 8 84
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 105 192
IPR000504 RRM_dom Pfam 10 75
IPR000504 RRM_dom Pfam 110 175
IPR035979 RBD_domain_sf SUPERFAMILY 105 206
IPR035979 RBD_domain_sf SUPERFAMILY 7 106
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 7 89
IPR000504 RRM_dom ProSiteProfiles 108 185
IPR000504 RRM_dom Pfam 110 175
IPR000504 RRM_dom Pfam 10 75
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 105 192
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 7 89
IPR035979 RBD_domain_sf SUPERFAMILY 7 106
IPR000504 RRM_dom ProSiteProfiles 8 84
IPR000504 RRM_dom SMART 9 80
IPR000504 RRM_dom SMART 109 181
IPR034131 DAZAP1_RRM2 CDD 106 185
IPR035979 RBD_domain_sf SUPERFAMILY 105 206

No CAZYmes available for this sequence

No external refs found!