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  5. Seita.2G097100.1

Seita.2G097100.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0004802 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004802_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G097100.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0016226 iron-sulfur cluster assembly ISM GOs from InterProScan
CC GO:0097361 CIA complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 205 237
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 9 349
IPR001680 WD40_rpt ProSiteProfiles 17 52
IPR001680 WD40_rpt ProSiteProfiles 110 151
IPR019775 WD40_repeat_CS ProSitePatterns 331 345
IPR028608 CIAO1/Cia1 Hamap 9 347
IPR019775 WD40_repeat_CS ProSitePatterns 129 143
IPR020472 G-protein_beta_WD-40_rep PRINTS 174 188
IPR020472 G-protein_beta_WD-40_rep PRINTS 331 345
IPR020472 G-protein_beta_WD-40_rep PRINTS 224 238
IPR001680 WD40_rpt SMART 253 292
IPR001680 WD40_rpt SMART 58 98
IPR001680 WD40_rpt SMART 303 344
IPR001680 WD40_rpt SMART 103 142
IPR001680 WD40_rpt SMART 148 187
IPR001680 WD40_rpt SMART 193 237
IPR001680 WD40_rpt SMART 10 52
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 12 343
IPR001680 WD40_rpt ProSiteProfiles 66 98
IPR001680 WD40_rpt ProSiteProfiles 155 186
IPR001680 WD40_rpt Pfam 15 51
IPR001680 WD40_rpt Pfam 150 186
IPR001680 WD40_rpt Pfam 105 141
IPR001680 WD40_rpt Pfam 311 343
IPR001680 WD40_rpt Pfam 68 97
IPR001680 WD40_rpt Pfam 196 237
IPR001680 WD40_rpt ProSiteProfiles 311 346
IPR028608 CIAO1/Cia1 PANTHER 5 345
IPR001680 WD40_rpt ProSiteProfiles 311 346
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 9 349
IPR001680 WD40_rpt ProSiteProfiles 66 98
IPR001680 WD40_rpt ProSiteProfiles 155 186
IPR020472 G-protein_beta_WD-40_rep PRINTS 174 188
IPR020472 G-protein_beta_WD-40_rep PRINTS 331 345
IPR020472 G-protein_beta_WD-40_rep PRINTS 224 238
IPR001680 WD40_rpt ProSiteProfiles 110 151
IPR001680 WD40_rpt SMART 253 292
IPR001680 WD40_rpt SMART 58 98
IPR001680 WD40_rpt SMART 303 344
IPR001680 WD40_rpt SMART 103 142
IPR001680 WD40_rpt SMART 148 187
IPR001680 WD40_rpt SMART 193 237
IPR001680 WD40_rpt SMART 10 52
IPR001680 WD40_rpt Pfam 150 186
IPR001680 WD40_rpt Pfam 312 343
IPR001680 WD40_rpt Pfam 15 52
IPR001680 WD40_rpt Pfam 63 97
IPR001680 WD40_rpt Pfam 105 141
IPR001680 WD40_rpt Pfam 195 237
IPR028608 CIAO1/Cia1 Hamap 9 347
IPR001680 WD40_rpt ProSiteProfiles 17 52
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 12 343
IPR019775 WD40_repeat_CS ProSitePatterns 331 345
IPR019775 WD40_repeat_CS ProSitePatterns 129 143
IPR001680 WD40_rpt ProSiteProfiles 205 237

No CAZYmes available for this sequence

No external refs found!