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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0008767 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008767_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G068200.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G068200.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_34 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 152 | 197 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 253 | 299 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 75 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 76 | 210 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 302 | 467 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 42 | 70 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 227 | 253 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 125 | 146 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 154 | 184 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 255 | 288 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 12 | 40 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 42 | 70 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 125 | 147 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 187 | 221 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 152 | 186 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 211 | 283 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 119 | 253 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 222 | 252 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 9 | 43 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 253 | 287 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 232 | 413 |
| IPR032867 | DYW_dom | Pfam | 427 | 550 |
No CAZYmes available for this sequence
| No external refs found! |