Seita.2G134900.1

Description : cleavage and polyadenylation specificity factor 100

Gene families : OG_01_0002702 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002702_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G134900.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_37

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	ISM	GOs from InterProScan
CC	GO:0005849	mRNA cleavage factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006378	mRNA polyadenylation	ISM	GOs from InterProScan
BP	GO:0006379	obsolete mRNA cleavage	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011108	RMMBL	Pfam	535	595
IPR035639	CPSF2_MBL	CDD	8	203
IPR001279	Metallo-B-lactamas	SMART	17	222
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	10	253
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	5	603
IPR025069	Cpsf2_C	Pfam	651	734
IPR027075	CPSF2	PANTHER	1	736
IPR022712	Beta_Casp	Pfam	242	365
IPR022712	Beta_Casp	SMART	242	365
IPR001279	Metallo-B-lactamas	Pfam	22	193
IPR022712	Beta_Casp	Pfam	242	365
IPR001279	Metallo-B-lactamas	SMART	17	222
IPR011108	RMMBL	Pfam	534	595
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	5	603
IPR035639	CPSF2_MBL	CDD	8	203
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	10	253
IPR001279	Metallo-B-lactamas	Pfam	22	188
IPR025069	Cpsf2_C	Pfam	651	734
IPR027075	CPSF2	PANTHER	1	736
IPR022712	Beta_Casp	SMART	242	365

No CAZYmes available for this sequence

External Links

No external refs found!