Seita.2G230100.1

Description : alpha-amylase-like

Gene families : OG_01_0000440 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000440_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G230100.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004556	alpha-amylase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016160	amylase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	ISM	GOs from InterProScan
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006047	Glyco_hydro_13_cat_dom	Pfam	54	216
IPR006046	Alpha_amylase	PRINTS	107	118
IPR006046	Alpha_amylase	PRINTS	199	210
IPR006046	Alpha_amylase	PRINTS	303	315
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	29	359
IPR012850	A-amylase_bs_C	SMART	366	426
IPR013775	A-amylase_pln	PIRSF	2	427
IPR013780	Glyco_hydro_b	Gene3D	370	427
IPR006047	Glyco_hydro_13_cat_dom	SMART	27	371
IPR012850	A-amylase_bs_C	Pfam	367	425
IPR006047	Glyco_hydro_13_cat_dom	Pfam	53	346
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	29	359
IPR013775	A-amylase_pln	PIRSF	2	427
IPR006046	Alpha_amylase	PRINTS	107	118
IPR006046	Alpha_amylase	PRINTS	199	210
IPR006046	Alpha_amylase	PRINTS	303	315
IPR012850	A-amylase_bs_C	Pfam	367	425
IPR013780	Glyco_hydro_b	Gene3D	370	427
IPR012850	A-amylase_bs_C	SMART	366	426
IPR006047	Glyco_hydro_13_cat_dom	SMART	27	371

No CAZYmes available for this sequence

External Links

No external refs found!