Seita.2G240300.1

Description : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Gene families : OG_01_0005671 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005671_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G240300.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_155

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0008173	RNA methyltransferase activity	None	Extended
MF	GO:0008175	tRNA methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016427	tRNA (cytidine) methyltransferase activity	None	Extended
MF	GO:0016428	tRNA (cytidine-5-)-methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029063	SAM-dependent_MTases_sf	Gene3D	49	389
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	54	513
IPR023267	RCMT	PRINTS	496	513
IPR023267	RCMT	PRINTS	188	198
IPR023267	RCMT	PRINTS	279	291
IPR023267	RCMT	PRINTS	329	345
IPR049560	MeTrfase_RsmB-F_NOP2_cat	Pfam	177	363
IPR023267	RCMT	PANTHER	6	829
IPR023270	RCMT_NCL1	PRINTS	134	155
IPR023270	RCMT_NCL1	PRINTS	682	694
IPR023270	RCMT_NCL1	PRINTS	363	382
IPR001678	MeTrfase_RsmB-F_NOP2_dom	ProSiteProfiles	73	514
IPR018314	Fmu/NOL1/Nop2p_CS	ProSitePatterns	278	289
IPR018314	Fmu/NOL1/Nop2p_CS	ProSitePatterns	278	289
IPR023267	RCMT	PRINTS	496	513
IPR023267	RCMT	PRINTS	188	198
IPR023267	RCMT	PRINTS	279	291
IPR023267	RCMT	PRINTS	329	345
IPR001678	MeTrfase_RsmB-F_NOP2_dom	ProSiteProfiles	73	514
IPR001678	MeTrfase_RsmB-F_NOP2_dom	Pfam	178	363
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	54	513
IPR023267	RCMT	PANTHER	6	809
IPR023270	RCMT_NCL1	PRINTS	134	155
IPR023270	RCMT_NCL1	PRINTS	682	694
IPR023270	RCMT_NCL1	PRINTS	363	382

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.2G240300.1

Expression Profile

Co-expression Networks

Functional Annotation