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  5. Seita.2G311000.1

Seita.2G311000.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0009547 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009547_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G311000.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 787 878
IPR011990 TPR-like_helical_dom_sf Gene3D 68 214
IPR011990 TPR-like_helical_dom_sf Gene3D 648 786
IPR011990 TPR-like_helical_dom_sf Gene3D 360 502
IPR011990 TPR-like_helical_dom_sf Gene3D 509 642
IPR011990 TPR-like_helical_dom_sf Gene3D 258 359
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 506 540
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 262 296
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 818 852
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 715 749
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 332 366
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 611 645
IPR002885 Pentatricopeptide_rpt NCBIfam 508 540
IPR002885 Pentatricopeptide_rpt NCBIfam 718 751
IPR002885 Pentatricopeptide_rpt NCBIfam 151 184
IPR002885 Pentatricopeptide_rpt NCBIfam 299 333
IPR002885 Pentatricopeptide_rpt NCBIfam 475 507
IPR002885 Pentatricopeptide_rpt NCBIfam 544 577
IPR002885 Pentatricopeptide_rpt NCBIfam 265 298
IPR002885 Pentatricopeptide_rpt NCBIfam 821 854
IPR002885 Pentatricopeptide_rpt NCBIfam 578 611
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR002885 Pentatricopeptide_rpt Pfam 651 676
IPR002885 Pentatricopeptide_rpt Pfam 152 180
IPR002885 Pentatricopeptide_rpt Pfam 613 640
IPR002885 Pentatricopeptide_rpt Pfam 442 467
IPR002885 Pentatricopeptide_rpt Pfam 335 363
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 576 610
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 471 505
IPR002885 Pentatricopeptide_rpt Pfam 818 857
IPR002885 Pentatricopeptide_rpt Pfam 263 308
IPR002885 Pentatricopeptide_rpt Pfam 471 517
IPR002885 Pentatricopeptide_rpt Pfam 544 588
IPR002885 Pentatricopeptide_rpt Pfam 717 759
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 148 182
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 646 676
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 541 575
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 576 610
IPR033443 PPR_long Pfam 486 593
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 332 366
IPR002885 Pentatricopeptide_rpt Pfam 718 746
IPR002885 Pentatricopeptide_rpt Pfam 265 294
IPR002885 Pentatricopeptide_rpt Pfam 651 676
IPR002885 Pentatricopeptide_rpt Pfam 152 180
IPR002885 Pentatricopeptide_rpt Pfam 442 467
IPR002885 Pentatricopeptide_rpt Pfam 613 640
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 148 182
IPR002885 Pentatricopeptide_rpt Pfam 296 344
IPR002885 Pentatricopeptide_rpt Pfam 818 856
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 611 645
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 541 575
IPR011990 TPR-like_helical_dom_sf Gene3D 258 359
IPR002885 Pentatricopeptide_rpt TIGRFAM 544 577
IPR002885 Pentatricopeptide_rpt TIGRFAM 578 611
IPR002885 Pentatricopeptide_rpt TIGRFAM 299 333
IPR002885 Pentatricopeptide_rpt TIGRFAM 821 854
IPR002885 Pentatricopeptide_rpt TIGRFAM 508 540
IPR002885 Pentatricopeptide_rpt TIGRFAM 265 298
IPR002885 Pentatricopeptide_rpt TIGRFAM 718 751
IPR002885 Pentatricopeptide_rpt TIGRFAM 475 507
IPR002885 Pentatricopeptide_rpt TIGRFAM 151 184
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 471 505
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 646 676
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 818 852
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 262 296
IPR011990 TPR-like_helical_dom_sf Gene3D 360 502
IPR011990 TPR-like_helical_dom_sf Gene3D 509 642
IPR011990 TPR-like_helical_dom_sf Gene3D 787 878
IPR011990 TPR-like_helical_dom_sf Gene3D 68 214
IPR011990 TPR-like_helical_dom_sf Gene3D 648 786
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 715 749
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 506 540

No CAZYmes available for this sequence

No external refs found!