1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.6G089000.1

Sevir.6G089000.1


Description : EMBRYO DEFECTIVE 140


Gene families : OG_01_0004143 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004143_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G089000.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G089000.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_103
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_96


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 63 579
IPR003107 HAT SMART 502 537
IPR003107 HAT SMART 87 119
IPR003107 HAT SMART 350 382
IPR003107 HAT SMART 315 347
IPR003107 HAT SMART 167 203
IPR003107 HAT SMART 277 313
IPR003107 HAT SMART 468 500
IPR003107 HAT SMART 125 156
IPR003107 HAT SMART 385 421
IPR011990 TPR-like_helical_dom_sf Gene3D 295 593
IPR035979 RBD_domain_sf SUPERFAMILY 657 762
IPR008847 Suf Pfam 459 622
IPR000504 RRM_dom Pfam 668 736
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 637 776
IPR011990 TPR-like_helical_dom_sf Gene3D 62 257
IPR000504 RRM_dom SMART 667 739
IPR000504 RRM_dom ProSiteProfiles 666 743

No CAZYmes available for this sequence

No external refs found!