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  5. Seita.2G422500.1

Seita.2G422500.1


Description : copper/zinc superoxide dismutase 1


Gene families : OG_01_0002098 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002098_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.2G422500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11


Type GO Term Name Evidence Source
BP GO:0006801 superoxide metabolic process ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001424 SOD_Cu_Zn_dom Pfam 13 147
IPR036423 SOD-like_Cu/Zn_dom_sf SUPERFAMILY 3 149
IPR024134 SOD_Cu/Zn_/chaperone PANTHER 2 148
IPR036423 SOD-like_Cu/Zn_dom_sf Gene3D 1 151
IPR001424 SOD_Cu_Zn_dom CDD 2 144
IPR001424 SOD_Cu_Zn_dom PRINTS 42 64
IPR001424 SOD_Cu_Zn_dom PRINTS 78 87
IPR001424 SOD_Cu_Zn_dom PRINTS 122 148
IPR001424 SOD_Cu_Zn_dom PRINTS 97 119
IPR018152 SOD_Cu/Zn_BS ProSitePatterns 136 147
IPR018152 SOD_Cu/Zn_BS ProSitePatterns 42 52
IPR001424 SOD_Cu_Zn_dom PRINTS 42 64
IPR001424 SOD_Cu_Zn_dom PRINTS 78 87
IPR001424 SOD_Cu_Zn_dom PRINTS 122 148
IPR001424 SOD_Cu_Zn_dom PRINTS 97 119
IPR024134 SOD_Cu/Zn_/chaperone PANTHER 1 151
IPR001424 SOD_Cu_Zn_dom CDD 2 144
IPR018152 SOD_Cu/Zn_BS ProSitePatterns 42 52
IPR036423 SOD-like_Cu/Zn_dom_sf Gene3D 1 151
IPR001424 SOD_Cu_Zn_dom Pfam 13 147
IPR036423 SOD-like_Cu/Zn_dom_sf SUPERFAMILY 3 149
IPR018152 SOD_Cu/Zn_BS ProSitePatterns 136 147

No CAZYmes available for this sequence

No external refs found!