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  5. Sevir.6G101557.1

Sevir.6G101557.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0015009 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015009_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G101557.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G101557.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_136
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_47


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 122 247
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 298 332
IPR002885 Pentatricopeptide_rpt TIGRFAM 301 334
IPR002885 Pentatricopeptide_rpt TIGRFAM 437 471
IPR002885 Pentatricopeptide_rpt TIGRFAM 402 435
IPR011990 TPR-like_helical_dom_sf Gene3D 368 589
IPR033443 PPR_long Pfam 411 498
IPR032867 DYW_dom Pfam 572 696
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 399 433
IPR002885 Pentatricopeptide_rpt Pfam 371 398
IPR002885 Pentatricopeptide_rpt Pfam 505 533
IPR002885 Pentatricopeptide_rpt Pfam 270 293
IPR002885 Pentatricopeptide_rpt Pfam 301 329
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 434 468
IPR011990 TPR-like_helical_dom_sf Gene3D 248 364

No CAZYmes available for this sequence

No external refs found!