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  5. Seita.3G042400.1

Seita.3G042400.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain


Gene families : OG_01_0000352 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000352_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G042400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC ProSiteProfiles 125 141
IPR001878 Znf_CCHC Pfam 103 118
IPR001878 Znf_CCHC Pfam 124 140
IPR000504 RRM_dom Pfam 13 73
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 3 88
IPR001878 Znf_CCHC SMART 103 119
IPR001878 Znf_CCHC SMART 125 141
IPR035979 RBD_domain_sf SUPERFAMILY 9 106
IPR000504 RRM_dom ProSiteProfiles 11 81
IPR001878 Znf_CCHC ProSiteProfiles 103 118
IPR000504 RRM_dom SMART 12 77
IPR036875 Znf_CCHC_sf SUPERFAMILY 94 142
IPR036875 Znf_CCHC_sf SUPERFAMILY 94 142
IPR000504 RRM_dom ProSiteProfiles 11 81
IPR001878 Znf_CCHC ProSiteProfiles 103 118
IPR001878 Znf_CCHC Pfam 124 140
IPR001878 Znf_CCHC Pfam 103 118
IPR001878 Znf_CCHC ProSiteProfiles 125 141
IPR001878 Znf_CCHC SMART 103 119
IPR001878 Znf_CCHC SMART 125 141
IPR000504 RRM_dom SMART 12 77
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 3 88
IPR035979 RBD_domain_sf SUPERFAMILY 9 106
IPR000504 RRM_dom Pfam 13 74

No CAZYmes available for this sequence

No external refs found!