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  5. Seita.3G046500.1

Seita.3G046500.1


Description : DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain


Gene families : OG_01_0003304 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003304_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G046500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001965 Znf_PHD SMART 118 171
IPR003034 SAP_dom SMART 12 46
IPR036361 SAP_dom_sf SUPERFAMILY 4 53
IPR013083 Znf_RING/FYVE/PHD Gene3D 107 176
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 119 170
IPR013083 Znf_RING/FYVE/PHD Gene3D 344 453
IPR031141 SIZ1/2_SP-RING CDD 366 415
IPR003034 SAP_dom Pfam 15 43
IPR004181 Znf_MIZ ProSiteProfiles 354 435
IPR004181 Znf_MIZ Pfam 365 413
IPR003034 SAP_dom ProSiteProfiles 12 46
IPR036361 SAP_dom_sf Gene3D 1 56
IPR011011 Znf_FYVE_PHD SUPERFAMILY 114 174
IPR001965 Znf_PHD SMART 118 171
IPR003034 SAP_dom SMART 12 46
IPR013083 Znf_RING/FYVE/PHD Gene3D 107 176
IPR004181 Znf_MIZ Pfam 365 413
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 119 170
IPR036361 SAP_dom_sf SUPERFAMILY 4 53
IPR036361 SAP_dom_sf Gene3D 1 56
IPR003034 SAP_dom ProSiteProfiles 12 46
IPR003034 SAP_dom Pfam 15 43
IPR013083 Znf_RING/FYVE/PHD Gene3D 344 453
IPR004181 Znf_MIZ ProSiteProfiles 354 431
IPR011011 Znf_FYVE_PHD SUPERFAMILY 114 174

No CAZYmes available for this sequence

No external refs found!