Seita.3G143200.1

Description : FtsJ-like methyltransferase family protein

Gene families : OG_01_0006981 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006981_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G143200.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	None	Extended
BP	GO:0001510	RNA methylation	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0008173	RNA methyltransferase activity	None	Extended
MF	GO:0008649	rRNA methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0031167	rRNA methylation	ISM	GOs from InterProScan
BP	GO:0032259	methylation	ISM	GOs from InterProScan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140102	catalytic activity, acting on a rRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029063	SAM-dependent_MTases_sf	Gene3D	19	208
IPR012920	rRNA_MeTfrase_SPB1-like_C	Pfam	590	791
IPR015507	rRNA-MeTfrase_E	Hamap	6	202
IPR028589	SPB1-like	Hamap	1	794
IPR002877	RNA_MeTrfase_FtsJ_dom	Pfam	22	201
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	21	202
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	Pfam	234	382
IPR012920	rRNA_MeTfrase_SPB1-like_C	Pfam	590	790
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	Pfam	234	382
IPR002877	RNA_MeTrfase_FtsJ_dom	Pfam	22	201
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	21	202
IPR028589	SPB1-like	Hamap	1	794
IPR015507	rRNA-MeTfrase_E	Hamap	6	202

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.3G143200.1

Expression Profile

Co-expression Networks

Functional Annotation