Seita.3G156100.1

Description : CRS1 / YhbY (CRM) domain-containing protein

Gene families : OG_01_0006963 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006963_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G156100.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_145

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001890	RNA-binding_CRM	SMART	596	683
IPR001890	RNA-binding_CRM	SMART	385	469
IPR001890	RNA-binding_CRM	SMART	183	266
IPR035920	YhbY-like_sf	SUPERFAMILY	384	476
IPR001890	RNA-binding_CRM	ProSiteProfiles	181	277
IPR035920	YhbY-like_sf	SUPERFAMILY	594	693
IPR035920	YhbY-like_sf	Gene3D	181	279
IPR035920	YhbY-like_sf	Gene3D	384	477
IPR001890	RNA-binding_CRM	ProSiteProfiles	594	694
IPR001890	RNA-binding_CRM	Pfam	596	683
IPR001890	RNA-binding_CRM	Pfam	385	469
IPR001890	RNA-binding_CRM	Pfam	184	266
IPR035920	YhbY-like_sf	Gene3D	595	697
IPR035920	YhbY-like_sf	SUPERFAMILY	182	276
IPR001890	RNA-binding_CRM	ProSiteProfiles	383	480
IPR045278	CRS1/CFM2/CFM3	PANTHER	53	782
IPR001890	RNA-binding_CRM	SMART	596	683
IPR001890	RNA-binding_CRM	SMART	385	469
IPR001890	RNA-binding_CRM	SMART	183	266
IPR045278	CRS1/CFM2/CFM3	PANTHER	2	790
IPR035920	YhbY-like_sf	Gene3D	181	279
IPR035920	YhbY-like_sf	Gene3D	384	477
IPR001890	RNA-binding_CRM	ProSiteProfiles	383	480
IPR035920	YhbY-like_sf	SUPERFAMILY	384	476
IPR035920	YhbY-like_sf	SUPERFAMILY	182	276
IPR001890	RNA-binding_CRM	ProSiteProfiles	181	277
IPR035920	YhbY-like_sf	Gene3D	595	697
IPR035920	YhbY-like_sf	SUPERFAMILY	594	693
IPR001890	RNA-binding_CRM	Pfam	184	266
IPR001890	RNA-binding_CRM	Pfam	385	469
IPR001890	RNA-binding_CRM	Pfam	597	683
IPR001890	RNA-binding_CRM	ProSiteProfiles	594	694

No CAZYmes available for this sequence

External Links

No external refs found!