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  5. Seita.3G159700.1

Seita.3G159700.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0020725 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0020725_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G159700.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_15


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 190 280
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 230 264
IPR002885 Pentatricopeptide_rpt Pfam 194 243
IPR002885 Pentatricopeptide_rpt Pfam 299 348
IPR002885 Pentatricopeptide_rpt Pfam 269 296
IPR002885 Pentatricopeptide_rpt Pfam 162 192
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 300 335
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 195 229
IPR002885 Pentatricopeptide_rpt NCBIfam 269 300
IPR002885 Pentatricopeptide_rpt NCBIfam 303 332
IPR002885 Pentatricopeptide_rpt NCBIfam 197 231
IPR002885 Pentatricopeptide_rpt NCBIfam 232 264
IPR002885 Pentatricopeptide_rpt NCBIfam 339 370
IPR002885 Pentatricopeptide_rpt NCBIfam 162 196
IPR011990 TPR-like_helical_dom_sf Gene3D 281 432
IPR011990 TPR-like_helical_dom_sf Gene3D 35 189
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 336 370
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 265 299
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 160 194
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 300 335
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 195 229
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 336 370
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 160 194
IPR002885 Pentatricopeptide_rpt TIGRFAM 232 264
IPR002885 Pentatricopeptide_rpt TIGRFAM 269 300
IPR002885 Pentatricopeptide_rpt TIGRFAM 197 231
IPR002885 Pentatricopeptide_rpt TIGRFAM 162 196
IPR002885 Pentatricopeptide_rpt TIGRFAM 339 370
IPR002885 Pentatricopeptide_rpt TIGRFAM 303 332
IPR002885 Pentatricopeptide_rpt Pfam 194 243
IPR002885 Pentatricopeptide_rpt Pfam 303 348
IPR011990 TPR-like_helical_dom_sf Gene3D 190 280
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 230 264
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 265 299
IPR002885 Pentatricopeptide_rpt Pfam 162 192
IPR002885 Pentatricopeptide_rpt Pfam 269 296
IPR011990 TPR-like_helical_dom_sf Gene3D 281 432
IPR011990 TPR-like_helical_dom_sf Gene3D 35 189

No CAZYmes available for this sequence

No external refs found!