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  5. Seita.3G175900.1

Seita.3G175900.1


Description : periodic tryptophan protein 2


Gene families : OG_01_0005355 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005355_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G175900.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019775 WD40_repeat_CS ProSitePatterns 430 444
IPR027145 PWP2 PANTHER 1 881
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 481 666
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 206 651
IPR001680 WD40_rpt SMART 84 121
IPR001680 WD40_rpt SMART 131 170
IPR001680 WD40_rpt SMART 43 81
IPR001680 WD40_rpt SMART 490 529
IPR001680 WD40_rpt SMART 594 633
IPR001680 WD40_rpt SMART 319 359
IPR001680 WD40_rpt SMART 362 401
IPR001680 WD40_rpt SMART 404 443
IPR001680 WD40_rpt SMART 277 316
IPR001680 WD40_rpt SMART 533 571
IPR001680 WD40_rpt SMART 702 733
IPR001680 WD40_rpt ProSiteProfiles 539 580
IPR007148 SSU_processome_Utp12 Pfam 774 879
IPR001680 WD40_rpt ProSiteProfiles 411 452
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 19 350
IPR019775 WD40_repeat_CS ProSitePatterns 516 530
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 17 269
IPR001680 WD40_rpt ProSiteProfiles 369 410
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 284 480
IPR001680 WD40_rpt ProSiteProfiles 497 530
IPR001680 WD40_rpt Pfam 368 400
IPR001680 WD40_rpt Pfam 539 571
IPR001680 WD40_rpt Pfam 407 443
IPR001680 WD40_rpt Pfam 134 168
IPR001680 WD40_rpt Pfam 492 529
IPR020472 G-protein_beta_WD-40_rep PRINTS 430 444
IPR020472 G-protein_beta_WD-40_rep PRINTS 516 530
IPR020472 G-protein_beta_WD-40_rep PRINTS 388 402
IPR001680 WD40_rpt ProSiteProfiles 497 530
IPR019775 WD40_repeat_CS ProSitePatterns 430 444
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 19 350
IPR020472 G-protein_beta_WD-40_rep PRINTS 430 444
IPR020472 G-protein_beta_WD-40_rep PRINTS 516 530
IPR020472 G-protein_beta_WD-40_rep PRINTS 388 402
IPR001680 WD40_rpt ProSiteProfiles 411 452
IPR001680 WD40_rpt SMART 84 121
IPR001680 WD40_rpt SMART 131 170
IPR001680 WD40_rpt SMART 43 81
IPR001680 WD40_rpt SMART 490 529
IPR001680 WD40_rpt SMART 594 633
IPR001680 WD40_rpt SMART 319 359
IPR001680 WD40_rpt SMART 362 401
IPR001680 WD40_rpt SMART 404 443
IPR001680 WD40_rpt SMART 533 571
IPR001680 WD40_rpt SMART 277 316
IPR001680 WD40_rpt SMART 702 733
IPR001680 WD40_rpt ProSiteProfiles 539 580
IPR001680 WD40_rpt Pfam 492 529
IPR001680 WD40_rpt Pfam 134 167
IPR001680 WD40_rpt Pfam 370 400
IPR001680 WD40_rpt Pfam 407 443
IPR001680 WD40_rpt Pfam 542 571
IPR019775 WD40_repeat_CS ProSitePatterns 516 530
IPR001680 WD40_rpt ProSiteProfiles 369 410
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 17 269
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 206 651
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 481 666
IPR007148 SSU_processome_Utp12 Pfam 774 879
IPR027145 PWP2 PANTHER 1 880
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 284 480

No CAZYmes available for this sequence

No external refs found!