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  5. Seita.3G223700.1

Seita.3G223700.1


Description : Carbohydrate-binding-like fold


Gene families : OG_01_0005505 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005505_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G223700.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_24


Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding ISM GOs from InterProScan
MF GO:2001070 starch binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR013783 Ig-like_fold Gene3D 99 198
IPR002044 CBM_fam20 SMART 102 194
IPR002044 CBM_fam20 Pfam 102 189
IPR002044 CBM_fam20 ProSiteProfiles 97 199
IPR013784 Carb-bd-like_fold SUPERFAMILY 99 197
IPR002044 CBM_fam20 ProSiteProfiles 97 199
IPR002044 CBM_fam20 Pfam 102 189
IPR013784 Carb-bd-like_fold SUPERFAMILY 99 197
IPR013783 Ig-like_fold Gene3D 99 198
IPR002044 CBM_fam20 SMART 102 194
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM20 90 361 4.1e-22 103 188
No external refs found!