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  5. Seita.3G300900.1

Seita.3G300900.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0005121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005121_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G300900.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_94


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006626 PbH1 SMART 523 544
IPR006626 PbH1 SMART 413 439
IPR006626 PbH1 SMART 556 577
IPR006626 PbH1 SMART 440 461
IPR006626 PbH1 SMART 494 515
IPR000743 Glyco_hydro_28 ProSitePatterns 470 484
IPR012334 Pectin_lyas_fold Gene3D 241 633
IPR000743 Glyco_hydro_28 Pfam 285 600
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 248 641
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 248 641
IPR006626 PbH1 SMART 523 544
IPR006626 PbH1 SMART 413 439
IPR006626 PbH1 SMART 556 577
IPR006626 PbH1 SMART 440 461
IPR006626 PbH1 SMART 494 515
IPR000743 Glyco_hydro_28 ProSitePatterns 470 484
IPR012334 Pectin_lyas_fold Gene3D 241 633
IPR000743 Glyco_hydro_28 Pfam 285 600
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 649 3.9e-89 277 603
No external refs found!