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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0007867 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007867_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G308800.1 | |
| Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 259 | 388 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 528 | 576 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 186 | 220 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 119 | 148 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 494 | 528 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 564 | 598 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 529 | 563 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 77 | 179 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 389 | 520 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 389 | 423 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 180 | 253 |
| IPR033443 | PPR_long | Pfam | 361 | 521 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 531 | 565 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 428 | 460 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 461 | 494 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 188 | 221 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 521 | 618 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 174 | 232 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 151 | 185 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 459 | 493 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 424 | 458 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 531 | 565 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 461 | 494 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 188 | 221 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 119 | 151 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 428 | 460 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 174 | 232 |
| IPR033443 | PPR_long | Pfam | 361 | 520 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 259 | 388 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 459 | 493 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 389 | 423 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 494 | 528 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 424 | 458 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 151 | 185 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 119 | 148 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 180 | 253 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 77 | 179 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 389 | 520 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 521 | 618 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 529 | 563 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 528 | 576 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 564 | 598 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 186 | 220 |
No CAZYmes available for this sequence
| No external refs found! |