Seita.3G346500.1

Description : phenylalanyl-tRNA synthetase class IIc family protein

Gene families : OG_01_0007976 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007976_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G346500.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_136

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	ISM	GOs from InterProScan
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0004826	phenylalanine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005121	Fdx_antiC-bd	SMART	369	459
IPR006195	aa-tRNA-synth_II	ProSiteProfiles	212	373
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	90	365
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	116	356
IPR036690	Fdx_antiC-bd_sf	SUPERFAMILY	364	459
IPR005121	Fdx_antiC-bd	ProSiteProfiles	369	459
IPR036690	Fdx_antiC-bd_sf	Gene3D	366	459
IPR004530	Phe-tRNA-synth_IIc_mito	NCBIfam	270	458
IPR005121	Fdx_antiC-bd	Pfam	369	459
IPR002319	Phenylalanyl-tRNA_Synthase	Pfam	155	356
IPR005121	Fdx_antiC-bd	ProSiteProfiles	369	459
IPR036690	Fdx_antiC-bd_sf	Gene3D	366	459
IPR004530	Phe-tRNA-synth_IIc_mito	TIGRFAM	270	458
IPR005121	Fdx_antiC-bd	Pfam	369	459
IPR005121	Fdx_antiC-bd	SMART	369	459
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	90	365
IPR006195	aa-tRNA-synth_II	ProSiteProfiles	212	373
IPR036690	Fdx_antiC-bd_sf	SUPERFAMILY	364	459
IPR004530	Phe-tRNA-synth_IIc_mito	PANTHER	76	453
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	116	356
IPR002319	Phenylalanyl-tRNA_Synthase	Pfam	155	356

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.3G346500.1

Expression Profile

Co-expression Networks

Functional Annotation