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  5. Seita.3G364500.1

Seita.3G364500.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010664 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010664_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.3G364500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR011990 TPR-like_helical_dom_sf Gene3D 256 320
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 165 199
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 391 425
IPR002885 Pentatricopeptide_rpt Pfam 465 490
IPR002885 Pentatricopeptide_rpt Pfam 170 195
IPR002885 Pentatricopeptide_rpt Pfam 362 384
IPR011990 TPR-like_helical_dom_sf Gene3D 454 616
IPR046848 E_motif Pfam 510 570
IPR002885 Pentatricopeptide_rpt NCBIfam 198 227
IPR002885 Pentatricopeptide_rpt NCBIfam 229 260
IPR002885 Pentatricopeptide_rpt NCBIfam 393 427
IPR002885 Pentatricopeptide_rpt NCBIfam 291 324
IPR002885 Pentatricopeptide_rpt NCBIfam 362 384
IPR002885 Pentatricopeptide_rpt NCBIfam 170 197
IPR002885 Pentatricopeptide_rpt NCBIfam 260 290
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 227 261
IPR002885 Pentatricopeptide_rpt Pfam 226 259
IPR002885 Pentatricopeptide_rpt Pfam 390 437
IPR002885 Pentatricopeptide_rpt Pfam 289 336
IPR011990 TPR-like_helical_dom_sf Gene3D 321 445
IPR011990 TPR-like_helical_dom_sf Gene3D 150 255
IPR011990 TPR-like_helical_dom_sf Gene3D 27 146
IPR011990 TPR-like_helical_dom_sf Gene3D 256 320
IPR011990 TPR-like_helical_dom_sf Gene3D 454 616
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 227 261
IPR002885 Pentatricopeptide_rpt Pfam 170 195
IPR002885 Pentatricopeptide_rpt Pfam 362 384
IPR002885 Pentatricopeptide_rpt Pfam 465 490
IPR011990 TPR-like_helical_dom_sf Gene3D 27 146
IPR002885 Pentatricopeptide_rpt Pfam 226 259
IPR002885 Pentatricopeptide_rpt Pfam 288 336
IPR002885 Pentatricopeptide_rpt Pfam 390 437
IPR002885 Pentatricopeptide_rpt TIGRFAM 393 427
IPR002885 Pentatricopeptide_rpt TIGRFAM 362 384
IPR002885 Pentatricopeptide_rpt TIGRFAM 260 290
IPR002885 Pentatricopeptide_rpt TIGRFAM 291 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 170 197
IPR002885 Pentatricopeptide_rpt TIGRFAM 198 227
IPR002885 Pentatricopeptide_rpt TIGRFAM 229 260
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 391 425
IPR011990 TPR-like_helical_dom_sf Gene3D 321 445
IPR011990 TPR-like_helical_dom_sf Gene3D 150 255
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 165 199

No CAZYmes available for this sequence

No external refs found!