1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.1G215100.1

Sevir.1G215100.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0003739 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003739_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G215100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G215100.1 No neighbors in network
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 128 162
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 198 232
IPR011990 TPR-like_helical_dom_sf Gene3D 88 226
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 334 368
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 665 699
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 474 508
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 509 543
IPR011990 TPR-like_helical_dom_sf Gene3D 330 395
IPR011990 TPR-like_helical_dom_sf Gene3D 396 469
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 264 298
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 544 578
IPR002885 Pentatricopeptide_rpt Pfam 508 557
IPR002885 Pentatricopeptide_rpt Pfam 298 347
IPR002885 Pentatricopeptide_rpt Pfam 579 626
IPR002885 Pentatricopeptide_rpt Pfam 198 242
IPR002885 Pentatricopeptide_rpt Pfam 130 176
IPR002885 Pentatricopeptide_rpt Pfam 404 452
IPR011990 TPR-like_helical_dom_sf Gene3D 482 645
IPR011990 TPR-like_helical_dom_sf Gene3D 646 820
IPR011990 TPR-like_helical_dom_sf Gene3D 227 327
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 579 613
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 404 438
IPR002885 Pentatricopeptide_rpt Pfam 365 397
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 439 473
IPR002885 Pentatricopeptide_rpt TIGRFAM 231 264
IPR002885 Pentatricopeptide_rpt TIGRFAM 703 735
IPR002885 Pentatricopeptide_rpt TIGRFAM 200 227
IPR002885 Pentatricopeptide_rpt TIGRFAM 165 198
IPR002885 Pentatricopeptide_rpt TIGRFAM 301 335
IPR002885 Pentatricopeptide_rpt TIGRFAM 131 164
IPR002885 Pentatricopeptide_rpt TIGRFAM 371 404
IPR002885 Pentatricopeptide_rpt TIGRFAM 441 475
IPR002885 Pentatricopeptide_rpt TIGRFAM 582 608
IPR002885 Pentatricopeptide_rpt TIGRFAM 267 299
IPR002885 Pentatricopeptide_rpt TIGRFAM 513 545
IPR002885 Pentatricopeptide_rpt TIGRFAM 406 439
IPR002885 Pentatricopeptide_rpt TIGRFAM 546 579
IPR002885 Pentatricopeptide_rpt TIGRFAM 337 370
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 163 197
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 131 374
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 700 734
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 299 333
IPR002885 Pentatricopeptide_rpt Pfam 268 296
IPR002885 Pentatricopeptide_rpt Pfam 704 732
IPR002885 Pentatricopeptide_rpt Pfam 668 696
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 369 403

No CAZYmes available for this sequence

No external refs found!