Seita.4G084400.1


Description : global transcription factor group A2


Gene families : OG_01_0005285 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005285_tree

Sequence : cds (download), rna (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.4G084400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81


Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISM GOs from InterProScan
CC GO:0005840 ribosome ISM GOs from InterProScan
BP GO:0006355 regulation of DNA-templated transcription ISM GOs from InterProScan
BP GO:0006357 regulation of transcription by RNA polymerase II ISM GOs from InterProScan
BP GO:0006412 translation ISM GOs from InterProScan
BP GO:0032784 regulation of DNA-templated transcription elongation ISM GOs from InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Source Start Stop
IPR005825 Ribosomal_uL24_CS ProSitePatterns 438 455
IPR041976 KOW_Spt5_3 CDD 486 536
IPR022581 Spt5_N Pfam 100 187
IPR014722 Rib_uL2_dom2 Gene3D 282 324
IPR041975 KOW_Spt5_2 CDD 435 485
IPR008991 Translation_prot_SH3-like_sf SUPERFAMILY 478 537
IPR005100 NGN-domain Pfam 193 274
IPR039659 SPT5 PANTHER 74 1041
IPR041980 KOW_Spt5_6 CDD 990 1047
IPR014722 Rib_uL2_dom2 Gene3D 429 486
IPR006645 NGN-like_dom SMART 191 277
IPR041978 KOW_Spt5_5 CDD 720 769
IPR036735 NGN_dom_sf Gene3D 173 275
IPR041973 KOW_Spt5_1 CDD 286 323
IPR014722 Rib_uL2_dom2 Gene3D 706 771
IPR017071 TF_Spt5_eukaryote PIRSF 2 1048
IPR041977 KOW_Spt5_4 CDD 614 656
IPR039385 NGN_Euk CDD 193 275
IPR005824 KOW SMART 610 637
IPR005824 KOW SMART 282 309
IPR005824 KOW SMART 721 748
IPR005824 KOW SMART 434 461
IPR005824 KOW SMART 996 1023
IPR005824 KOW SMART 486 513
IPR014722 Rib_uL2_dom2 Gene3D 488 538
IPR022581 Spt5_N Pfam 100 187
IPR014722 Rib_uL2_dom2 Gene3D 429 486
IPR005824 KOW SMART 610 637
IPR005824 KOW SMART 282 309
IPR005824 KOW SMART 721 748
IPR005824 KOW SMART 434 461
IPR005824 KOW SMART 996 1023
IPR005824 KOW SMART 486 513
IPR005824 KOW Pfam 489 516
IPR039385 NGN_Euk CDD 193 275
IPR041978 KOW_Spt5_5 CDD 720 769
IPR017071 TF_Spt5_eukaryote PIRSF 2 1048
IPR041976 KOW_Spt5_3 CDD 486 536
IPR039659 SPT5 PANTHER 25 1048
IPR005100 NGN-domain Pfam 193 274
IPR014722 Rib_uL2_dom2 Gene3D 488 538
IPR006645 NGN-like_dom SMART 191 277
IPR041980 KOW_Spt5_6 CDD 990 1047
IPR041975 KOW_Spt5_2 CDD 435 485
IPR041973 KOW_Spt5_1 CDD 286 323
IPR041977 KOW_Spt5_4 CDD 614 656
IPR036735 NGN_dom_sf Gene3D 173 275
IPR014722 Rib_uL2_dom2 Gene3D 282 324
IPR014722 Rib_uL2_dom2 Gene3D 706 771
IPR008991 Translation_prot_SH3-like_sf SUPERFAMILY 478 537
IPR005825 Ribosomal_uL24_CS ProSitePatterns 438 455

No CAZYmes available for this sequence

No external refs found!