Description : global transcription factor group A2
Gene families : OG_01_0005285 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005285_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.4G084400.1 | |
Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | ISM | GOs from InterProScan |
CC | GO:0005840 | ribosome | ISM | GOs from InterProScan |
BP | GO:0006355 | regulation of DNA-templated transcription | ISM | GOs from InterProScan |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | ISM | GOs from InterProScan |
BP | GO:0006412 | translation | ISM | GOs from InterProScan |
BP | GO:0032784 | regulation of DNA-templated transcription elongation | ISM | GOs from InterProScan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Source | Start | Stop |
---|---|---|---|---|
IPR005825 | Ribosomal_uL24_CS | ProSitePatterns | 438 | 455 |
IPR041976 | KOW_Spt5_3 | CDD | 486 | 536 |
IPR022581 | Spt5_N | Pfam | 100 | 187 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 282 | 324 |
IPR041975 | KOW_Spt5_2 | CDD | 435 | 485 |
IPR008991 | Translation_prot_SH3-like_sf | SUPERFAMILY | 478 | 537 |
IPR005100 | NGN-domain | Pfam | 193 | 274 |
IPR039659 | SPT5 | PANTHER | 74 | 1041 |
IPR041980 | KOW_Spt5_6 | CDD | 990 | 1047 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 429 | 486 |
IPR006645 | NGN-like_dom | SMART | 191 | 277 |
IPR041978 | KOW_Spt5_5 | CDD | 720 | 769 |
IPR036735 | NGN_dom_sf | Gene3D | 173 | 275 |
IPR041973 | KOW_Spt5_1 | CDD | 286 | 323 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 706 | 771 |
IPR017071 | TF_Spt5_eukaryote | PIRSF | 2 | 1048 |
IPR041977 | KOW_Spt5_4 | CDD | 614 | 656 |
IPR039385 | NGN_Euk | CDD | 193 | 275 |
IPR005824 | KOW | SMART | 610 | 637 |
IPR005824 | KOW | SMART | 282 | 309 |
IPR005824 | KOW | SMART | 721 | 748 |
IPR005824 | KOW | SMART | 434 | 461 |
IPR005824 | KOW | SMART | 996 | 1023 |
IPR005824 | KOW | SMART | 486 | 513 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 488 | 538 |
IPR022581 | Spt5_N | Pfam | 100 | 187 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 429 | 486 |
IPR005824 | KOW | SMART | 610 | 637 |
IPR005824 | KOW | SMART | 282 | 309 |
IPR005824 | KOW | SMART | 721 | 748 |
IPR005824 | KOW | SMART | 434 | 461 |
IPR005824 | KOW | SMART | 996 | 1023 |
IPR005824 | KOW | SMART | 486 | 513 |
IPR005824 | KOW | Pfam | 489 | 516 |
IPR039385 | NGN_Euk | CDD | 193 | 275 |
IPR041978 | KOW_Spt5_5 | CDD | 720 | 769 |
IPR017071 | TF_Spt5_eukaryote | PIRSF | 2 | 1048 |
IPR041976 | KOW_Spt5_3 | CDD | 486 | 536 |
IPR039659 | SPT5 | PANTHER | 25 | 1048 |
IPR005100 | NGN-domain | Pfam | 193 | 274 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 488 | 538 |
IPR006645 | NGN-like_dom | SMART | 191 | 277 |
IPR041980 | KOW_Spt5_6 | CDD | 990 | 1047 |
IPR041975 | KOW_Spt5_2 | CDD | 435 | 485 |
IPR041973 | KOW_Spt5_1 | CDD | 286 | 323 |
IPR041977 | KOW_Spt5_4 | CDD | 614 | 656 |
IPR036735 | NGN_dom_sf | Gene3D | 173 | 275 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 282 | 324 |
IPR014722 | Rib_uL2_dom2 | Gene3D | 706 | 771 |
IPR008991 | Translation_prot_SH3-like_sf | SUPERFAMILY | 478 | 537 |
IPR005825 | Ribosomal_uL24_CS | ProSitePatterns | 438 | 455 |
No CAZYmes available for this sequence
No external refs found! |