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  5. Sevir.6G144600.1

Sevir.6G144600.1


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0015945 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015945_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G144600.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G144600.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_74


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 266 300
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 616 650
IPR002885 Pentatricopeptide_rpt Pfam 198 228
IPR002885 Pentatricopeptide_rpt Pfam 338 364
IPR002885 Pentatricopeptide_rpt Pfam 303 333
IPR002885 Pentatricopeptide_rpt Pfam 654 683
IPR002885 Pentatricopeptide_rpt Pfam 162 188
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 406 440
IPR011990 TPR-like_helical_dom_sf Gene3D 561 699
IPR011990 TPR-like_helical_dom_sf Gene3D 191 284
IPR011990 TPR-like_helical_dom_sf Gene3D 80 190
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 301 335
IPR011990 TPR-like_helical_dom_sf Gene3D 364 436
IPR011990 TPR-like_helical_dom_sf Gene3D 294 363
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 476 510
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 511 545
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 196 230
IPR002885 Pentatricopeptide_rpt TIGRFAM 444 476
IPR002885 Pentatricopeptide_rpt TIGRFAM 233 267
IPR002885 Pentatricopeptide_rpt TIGRFAM 583 616
IPR002885 Pentatricopeptide_rpt TIGRFAM 373 406
IPR002885 Pentatricopeptide_rpt TIGRFAM 548 582
IPR002885 Pentatricopeptide_rpt TIGRFAM 198 231
IPR002885 Pentatricopeptide_rpt TIGRFAM 619 651
IPR002885 Pentatricopeptide_rpt TIGRFAM 338 371
IPR002885 Pentatricopeptide_rpt TIGRFAM 268 301
IPR002885 Pentatricopeptide_rpt TIGRFAM 478 512
IPR002885 Pentatricopeptide_rpt TIGRFAM 654 686
IPR002885 Pentatricopeptide_rpt TIGRFAM 408 441
IPR011990 TPR-like_helical_dom_sf Gene3D 451 560
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 546 580
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 371 405
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 336 370
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 581 615
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 441 475
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 159 193
IPR002885 Pentatricopeptide_rpt Pfam 230 279
IPR002885 Pentatricopeptide_rpt Pfam 510 559
IPR002885 Pentatricopeptide_rpt Pfam 440 489
IPR002885 Pentatricopeptide_rpt Pfam 580 627
IPR002885 Pentatricopeptide_rpt Pfam 370 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 231 265
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 651 685

No CAZYmes available for this sequence

No external refs found!