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  5. Seita.4G191000.1

Seita.4G191000.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0015164 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015164_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.4G191000.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt Pfam 241 271
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 209 244
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 245 279
IPR002885 Pentatricopeptide_rpt NCBIfam 458 489
IPR002885 Pentatricopeptide_rpt NCBIfam 388 420
IPR002885 Pentatricopeptide_rpt NCBIfam 317 351
IPR002885 Pentatricopeptide_rpt NCBIfam 282 316
IPR002885 Pentatricopeptide_rpt NCBIfam 211 245
IPR002885 Pentatricopeptide_rpt NCBIfam 248 279
IPR002885 Pentatricopeptide_rpt NCBIfam 632 666
IPR002885 Pentatricopeptide_rpt NCBIfam 597 630
IPR002885 Pentatricopeptide_rpt NCBIfam 493 526
IPR002885 Pentatricopeptide_rpt NCBIfam 422 453
IPR002885 Pentatricopeptide_rpt NCBIfam 667 699
IPR002885 Pentatricopeptide_rpt NCBIfam 352 386
IPR002885 Pentatricopeptide_rpt NCBIfam 702 734
IPR002885 Pentatricopeptide_rpt NCBIfam 177 209
IPR002885 Pentatricopeptide_rpt Pfam 349 397
IPR002885 Pentatricopeptide_rpt Pfam 279 322
IPR002885 Pentatricopeptide_rpt Pfam 664 712
IPR011990 TPR-like_helical_dom_sf Gene3D 77 225
IPR011990 TPR-like_helical_dom_sf Gene3D 552 639
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 174 208
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR033443 PPR_long Pfam 447 557
IPR011990 TPR-like_helical_dom_sf Gene3D 439 551
IPR011990 TPR-like_helical_dom_sf Gene3D 645 787
IPR011990 TPR-like_helical_dom_sf Gene3D 226 342
IPR002885 Pentatricopeptide_rpt Pfam 738 759
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 700 734
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 490 524
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 595 629
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 665 699
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 630 664
IPR002885 Pentatricopeptide_rpt Pfam 584 642
IPR002885 Pentatricopeptide_rpt Pfam 170 222
IPR002885 Pentatricopeptide_rpt Pfam 406 434
IPR011990 TPR-like_helical_dom_sf Gene3D 343 415
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 665 699
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 595 629
IPR002885 Pentatricopeptide_rpt TIGRFAM 282 316
IPR002885 Pentatricopeptide_rpt TIGRFAM 667 699
IPR002885 Pentatricopeptide_rpt TIGRFAM 248 279
IPR002885 Pentatricopeptide_rpt TIGRFAM 177 209
IPR002885 Pentatricopeptide_rpt TIGRFAM 211 245
IPR002885 Pentatricopeptide_rpt TIGRFAM 458 489
IPR002885 Pentatricopeptide_rpt TIGRFAM 352 386
IPR002885 Pentatricopeptide_rpt TIGRFAM 632 666
IPR002885 Pentatricopeptide_rpt TIGRFAM 388 420
IPR002885 Pentatricopeptide_rpt TIGRFAM 493 526
IPR002885 Pentatricopeptide_rpt TIGRFAM 317 351
IPR002885 Pentatricopeptide_rpt TIGRFAM 702 734
IPR002885 Pentatricopeptide_rpt TIGRFAM 422 453
IPR002885 Pentatricopeptide_rpt TIGRFAM 597 630
IPR002885 Pentatricopeptide_rpt Pfam 349 396
IPR002885 Pentatricopeptide_rpt Pfam 279 320
IPR033443 PPR_long Pfam 450 554
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR002885 Pentatricopeptide_rpt Pfam 406 434
IPR002885 Pentatricopeptide_rpt Pfam 584 642
IPR002885 Pentatricopeptide_rpt Pfam 170 222
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 700 734
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 490 524
IPR002885 Pentatricopeptide_rpt Pfam 738 759
IPR002885 Pentatricopeptide_rpt Pfam 702 731
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 209 244
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 630 664
IPR011990 TPR-like_helical_dom_sf Gene3D 439 551
IPR011990 TPR-like_helical_dom_sf Gene3D 645 787
IPR011990 TPR-like_helical_dom_sf Gene3D 226 342
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314
IPR002885 Pentatricopeptide_rpt Pfam 662 692
IPR002885 Pentatricopeptide_rpt Pfam 241 271
IPR011990 TPR-like_helical_dom_sf Gene3D 343 415
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 245 279
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 174 208
IPR011990 TPR-like_helical_dom_sf Gene3D 77 225
IPR011990 TPR-like_helical_dom_sf Gene3D 552 639

No CAZYmes available for this sequence

No external refs found!