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  5. Seita.4G193100.1

Seita.4G193100.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0013439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013439_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.4G193100.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019775 WD40_repeat_CS ProSitePatterns 155 169
IPR001680 WD40_rpt ProSiteProfiles 184 218
IPR001680 WD40_rpt ProSiteProfiles 93 134
IPR001680 WD40_rpt ProSiteProfiles 135 177
IPR019775 WD40_repeat_CS ProSitePatterns 112 126
IPR001680 WD40_rpt ProSiteProfiles 311 344
IPR001680 WD40_rpt Pfam 46 81
IPR001680 WD40_rpt Pfam 261 301
IPR001680 WD40_rpt Pfam 218 251
IPR001680 WD40_rpt Pfam 177 209
IPR001680 WD40_rpt Pfam 91 125
IPR001680 WD40_rpt Pfam 129 168
IPR001680 WD40_rpt Pfam 307 341
IPR001680 WD40_rpt ProSiteProfiles 50 81
IPR001680 WD40_rpt ProSiteProfiles 219 253
IPR001680 WD40_rpt SMART 86 125
IPR001680 WD40_rpt SMART 258 301
IPR001680 WD40_rpt SMART 128 168
IPR001680 WD40_rpt SMART 171 209
IPR001680 WD40_rpt SMART 43 82
IPR001680 WD40_rpt SMART 304 343
IPR001680 WD40_rpt SMART 212 251
IPR020472 G-protein_beta_WD-40_rep PRINTS 238 252
IPR020472 G-protein_beta_WD-40_rep PRINTS 112 126
IPR020472 G-protein_beta_WD-40_rep PRINTS 155 169
IPR001680 WD40_rpt ProSiteProfiles 280 310
IPR019775 WD40_repeat_CS ProSitePatterns 288 302
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 42 344
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 47 341
IPR001680 WD40_rpt ProSiteProfiles 50 81
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 42 344
IPR019775 WD40_repeat_CS ProSitePatterns 155 169
IPR019775 WD40_repeat_CS ProSitePatterns 112 126
IPR001680 WD40_rpt Pfam 219 251
IPR001680 WD40_rpt Pfam 260 301
IPR001680 WD40_rpt Pfam 307 341
IPR001680 WD40_rpt Pfam 130 168
IPR001680 WD40_rpt Pfam 88 125
IPR001680 WD40_rpt Pfam 47 81
IPR001680 WD40_rpt ProSiteProfiles 219 253
IPR001680 WD40_rpt ProSiteProfiles 184 218
IPR001680 WD40_rpt ProSiteProfiles 280 310
IPR020472 G-protein_beta_WD-40_rep PRINTS 238 252
IPR020472 G-protein_beta_WD-40_rep PRINTS 112 126
IPR020472 G-protein_beta_WD-40_rep PRINTS 155 169
IPR019775 WD40_repeat_CS ProSitePatterns 288 302
IPR001680 WD40_rpt ProSiteProfiles 93 134
IPR001680 WD40_rpt ProSiteProfiles 311 344
IPR001680 WD40_rpt ProSiteProfiles 135 177
IPR001680 WD40_rpt SMART 86 125
IPR001680 WD40_rpt SMART 128 168
IPR001680 WD40_rpt SMART 258 301
IPR001680 WD40_rpt SMART 171 209
IPR001680 WD40_rpt SMART 43 82
IPR001680 WD40_rpt SMART 304 343
IPR001680 WD40_rpt SMART 212 251
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 47 341

No CAZYmes available for this sequence

No external refs found!