Seita.4G252700.1

Description : DNA-directed DNA polymerases

Gene families : OG_01_0006187 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006187_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.4G252700.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001126	UmuC	ProSiteProfiles	378	559
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	365	609
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	378	538
IPR036420	BRCT_dom_sf	SUPERFAMILY	80	170
IPR001126	UmuC	Pfam	381	528
IPR001357	BRCT_dom	ProSiteProfiles	78	169
IPR036775	DNA_pol_Y-fam_lit_finger_sf	Gene3D	614	736
IPR001357	BRCT_dom	Pfam	81	156
IPR017961	DNA_pol_Y-fam_little_finger	Pfam	616	732
IPR036420	BRCT_dom_sf	Gene3D	73	170
IPR001357	BRCT_dom	SMART	80	159
IPR036775	DNA_pol_Y-fam_lit_finger_sf	SUPERFAMILY	614	727
IPR036420	BRCT_dom_sf	SUPERFAMILY	80	170
IPR036775	DNA_pol_Y-fam_lit_finger_sf	Gene3D	614	736
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	378	538
IPR001357	BRCT_dom	Pfam	81	168
IPR001126	UmuC	Pfam	381	527
IPR001357	BRCT_dom	SMART	80	159
IPR036775	DNA_pol_Y-fam_lit_finger_sf	SUPERFAMILY	614	727
IPR001126	UmuC	ProSiteProfiles	378	559
IPR017961	DNA_pol_Y-fam_little_finger	Pfam	615	732
IPR001357	BRCT_dom	ProSiteProfiles	78	169
IPR036420	BRCT_dom_sf	Gene3D	73	170
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	365	609

No CAZYmes available for this sequence

External Links

No external refs found!