Seita.4G257900.1

Description : Ubiquitin C-terminal hydrolases superfamily protein

Gene families : OG_01_0007207 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007207_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.4G257900.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_155

Type	GO Term	Name	Evidence	Source
BP	GO:0000245	spliceosomal complex assembly	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016579	protein deubiquitination	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	protein-RNA complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	protein-RNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR028889	USP_dom	ProSiteProfiles	215	547
IPR033809	USP39	CDD	96	545
IPR001607	Znf_UBP	ProSiteProfiles	93	190
IPR001394	Peptidase_C19_UCH	Pfam	215	544
IPR001607	Znf_UBP	SMART	113	162
IPR001607	Znf_UBP	Pfam	114	175
IPR013083	Znf_RING/FYVE/PHD	Gene3D	95	183
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	212	546
IPR033809	USP39	CDD	96	545
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	212	546
IPR001607	Znf_UBP	ProSiteProfiles	112	173
IPR001607	Znf_UBP	SMART	113	162
IPR013083	Znf_RING/FYVE/PHD	Gene3D	95	183
IPR001607	Znf_UBP	Pfam	114	175
IPR001394	Peptidase_C19_UCH	Pfam	215	544
IPR028889	USP_dom	ProSiteProfiles	215	547

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.4G257900.1

Expression Profile

Co-expression Networks

Functional Annotation