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  5. Seita.4G282400.1

Seita.4G282400.1


Description : laccase 14


Gene families : OG_01_0000046 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000046_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.4G282400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
BP GO:0046274 lignin catabolic process ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
MF GO:0052716 hydroquinone:oxygen oxidoreductase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR008972 Cupredoxin Gene3D 396 595
IPR008972 Cupredoxin SUPERFAMILY 34 169
IPR034288 CuRO_1_LCC CDD 42 158
IPR001117 Cu-oxidase_2nd Pfam 177 327
IPR034289 CuRO_3_LCC CDD 436 578
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 558 569
IPR017761 Laccase NCBIfam 38 595
IPR008972 Cupredoxin Gene3D 29 158
IPR008972 Cupredoxin SUPERFAMILY 173 362
IPR033138 Cu_oxidase_CS ProSitePatterns 553 573
IPR008972 Cupredoxin Gene3D 173 365
IPR034285 CuRO_2_LCC CDD 177 326
IPR008972 Cupredoxin SUPERFAMILY 398 595
IPR011707 Cu-oxidase-like_N Pfam 46 159
IPR011706 Cu-oxidase_C Pfam 465 578
IPR045087 Cu-oxidase_fam PANTHER 40 588
IPR008972 Cupredoxin Gene3D 396 595
IPR008972 Cupredoxin SUPERFAMILY 398 595
IPR008972 Cupredoxin SUPERFAMILY 34 169
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 558 569
IPR017761 Laccase TIGRFAM 38 595
IPR034288 CuRO_1_LCC CDD 42 158
IPR001117 Cu-oxidase_2nd Pfam 177 327
IPR033138 Cu_oxidase_CS ProSitePatterns 553 573
IPR011707 Cu-oxidase-like_N Pfam 47 159
IPR008972 Cupredoxin SUPERFAMILY 173 362
IPR034285 CuRO_2_LCC CDD 177 326
IPR008972 Cupredoxin Gene3D 173 365
IPR008972 Cupredoxin Gene3D 29 158
IPR045087 Cu-oxidase_fam PANTHER 12 595
IPR034289 CuRO_3_LCC CDD 436 578
IPR011706 Cu-oxidase_C Pfam 467 578
HMM Family HMM Length Query Length e-Value Query Start Query End
AA1 358 596 5.5e-117 56 569
No external refs found!