1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G029200.1

Seita.5G029200.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0005121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005121_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G029200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_40


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 ProSitePatterns 309 322
IPR012334 Pectin_lyas_fold Gene3D 79 472
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 87 477
IPR000743 Glyco_hydro_28 Pfam 132 440
IPR006626 PbH1 SMART 252 278
IPR006626 PbH1 SMART 279 300
IPR006626 PbH1 SMART 361 382
IPR006626 PbH1 SMART 332 353
IPR006626 PbH1 SMART 302 322
IPR000743 Glyco_hydro_28 Pfam 132 440
IPR000743 Glyco_hydro_28 ProSitePatterns 309 322
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 87 477
IPR012334 Pectin_lyas_fold Gene3D 79 472
IPR006626 PbH1 SMART 252 278
IPR006626 PbH1 SMART 279 300
IPR006626 PbH1 SMART 361 382
IPR006626 PbH1 SMART 332 353
IPR006626 PbH1 SMART 302 322
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 487 2.6e-95 113 455
No external refs found!