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Description : RNA recognition motif (RRM)-containing protein
Gene families : OG_01_0006840 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006840_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G065500.1 | |
| Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0046872 | metal ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000504 | RRM_dom | SMART | 343 | 409 |
| IPR001298 | Filamin/ABP280_rpt | SMART | 77 | 180 |
| IPR013783 | Ig-like_fold | Gene3D | 75 | 182 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 309 | 421 |
| IPR000571 | Znf_CCCH | SMART | 247 | 273 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 325 | 422 |
| IPR017868 | Filamin/ABP280_repeat-like | ProSiteProfiles | 73 | 177 |
| IPR017868 | Filamin/ABP280_repeat-like | Pfam | 75 | 173 |
| IPR014756 | Ig_E-set | SUPERFAMILY | 74 | 175 |
| IPR000504 | RRM_dom | ProSiteProfiles | 342 | 413 |
| IPR000571 | Znf_CCCH | ProSiteProfiles | 251 | 274 |
| IPR000504 | RRM_dom | Pfam | 346 | 406 |
| IPR000504 | RRM_dom | SMART | 343 | 409 |
| IPR017868 | Filamin/ABP280_repeat-like | Pfam | 75 | 173 |
| IPR001298 | Filamin/ABP280_rpt | SMART | 77 | 180 |
| IPR000504 | RRM_dom | Pfam | 346 | 406 |
| IPR000571 | Znf_CCCH | SMART | 247 | 273 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 309 | 421 |
| IPR000571 | Znf_CCCH | ProSiteProfiles | 251 | 274 |
| IPR014756 | Ig_E-set | SUPERFAMILY | 74 | 175 |
| IPR017868 | Filamin/ABP280_repeat-like | ProSiteProfiles | 73 | 177 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 325 | 422 |
| IPR013783 | Ig-like_fold | Gene3D | 75 | 182 |
| IPR000504 | RRM_dom | ProSiteProfiles | 342 | 413 |
No CAZYmes available for this sequence
| No external refs found! |