Seita.5G112400.1

Description : Arginyl-tRNA synthetase, class Ic

Gene families : OG_01_0003316 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003316_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G112400.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_128

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0004814	arginine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	ISM	GOs from InterProScan
BP	GO:0006420	arginyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	135	180
IPR009080	tRNAsynth_Ia_anticodon-bd	SUPERFAMILY	395	495
IPR008909	DALR_anticod-bd	SMART	392	496
IPR036695	Arg-tRNA-synth_N_sf	Gene3D	27	124
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	181	395
IPR005148	Arg-tRNA-synth_N	Pfam	38	107
IPR035684	ArgRS_core	Pfam	133	180
IPR035684	ArgRS_core	Pfam	209	389
IPR036695	Arg-tRNA-synth_N_sf	SUPERFAMILY	39	121
IPR008909	DALR_anticod-bd	Pfam	392	496
IPR001278	Arg-tRNA-ligase	PANTHER	183	397
IPR005148	Arg-tRNA-synth_N	SMART	33	108
IPR001278	Arg-tRNA-ligase	PRINTS	151	167
IPR001278	Arg-tRNA-ligase	PRINTS	136	151
IPR008909	DALR_anticod-bd	SMART	392	496
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	135	180
IPR036695	Arg-tRNA-synth_N_sf	Gene3D	27	124
IPR001278	Arg-tRNA-ligase	PANTHER	208	399
IPR001278	Arg-tRNA-ligase	PANTHER	181	209
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	181	395
IPR009080	tRNAsynth_Ia_anticodon-bd	SUPERFAMILY	395	495
IPR008909	DALR_anticod-bd	Pfam	394	495
IPR036695	Arg-tRNA-synth_N_sf	SUPERFAMILY	39	121
IPR005148	Arg-tRNA-synth_N	SMART	33	108
IPR005148	Arg-tRNA-synth_N	Pfam	38	107
IPR035684	ArgRS_core	Pfam	133	180
IPR035684	ArgRS_core	Pfam	209	389
IPR001278	Arg-tRNA-ligase	PRINTS	151	167
IPR001278	Arg-tRNA-ligase	PRINTS	136	151
IPR001278	Arg-tRNA-ligase	PANTHER	13	180
IPR001278	Arg-tRNA-ligase	PANTHER	397	496

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.5G112400.1

Expression Profile

Co-expression Networks

Functional Annotation