Sevir.6G180400.1

Description : germin 3

Gene families : OG_01_0014142 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014142_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G180400.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G180400.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_96
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_36

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0030145	manganese ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006045	Cupin_1	Pfam	69	201
IPR019780	Germin_Mn-BS	ProSitePatterns	98	111
IPR014710	RmlC-like_jellyroll	Gene3D	21	211
IPR006045	Cupin_1	SMART	55	202
IPR001929	Germin	PRINTS	167	182
IPR001929	Germin	PRINTS	103	123
IPR001929	Germin	PRINTS	134	154
IPR011051	RmlC_Cupin_sf	SUPERFAMILY	24	206

No CAZYmes available for this sequence

External Links

No external refs found!