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  5. Seita.5G207300.1

Seita.5G207300.1


Description : Calcium-binding EF hand family protein


Gene families : OG_01_0002248 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002248_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G207300.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 360 372
IPR011992 EF-hand-dom_pair SUPERFAMILY 147 255
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 321 333
IPR002048 EF_hand_dom Pfam 312 374
IPR011992 EF-hand-dom_pair SUPERFAMILY 228 395
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 235 247
IPR002048 EF_hand_dom ProSiteProfiles 228 257
IPR002048 EF_hand_dom SMART 226 254
IPR002048 EF_hand_dom SMART 265 293
IPR002048 EF_hand_dom SMART 312 340
IPR002048 EF_hand_dom SMART 351 383
IPR002048 EF_hand_dom Pfam 231 251
IPR002048 EF_hand_dom ProSiteProfiles 274 296
IPR002048 EF_hand_dom ProSiteProfiles 308 343
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 274 286
IPR011992 EF-hand-dom_pair SUPERFAMILY 228 395
IPR002048 EF_hand_dom Pfam 230 250
IPR002048 EF_hand_dom SMART 226 254
IPR002048 EF_hand_dom SMART 265 293
IPR002048 EF_hand_dom SMART 312 340
IPR002048 EF_hand_dom SMART 351 383
IPR002048 EF_hand_dom ProSiteProfiles 308 343
IPR002048 EF_hand_dom ProSiteProfiles 274 296
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 274 286
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 360 372
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 321 333
IPR002048 EF_hand_dom ProSiteProfiles 228 257
IPR011992 EF-hand-dom_pair SUPERFAMILY 147 255
IPR002048 EF_hand_dom Pfam 312 374
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 235 247

No CAZYmes available for this sequence

No external refs found!