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  5. Seita.5G220400.1

Seita.5G220400.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0013176 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013176_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G220400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_145


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 518 552
IPR011990 TPR-like_helical_dom_sf Gene3D 74 196
IPR011990 TPR-like_helical_dom_sf Gene3D 197 300
IPR011990 TPR-like_helical_dom_sf Gene3D 410 495
IPR011990 TPR-like_helical_dom_sf Gene3D 513 605
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 316 346
IPR002885 Pentatricopeptide_rpt NCBIfam 248 281
IPR002885 Pentatricopeptide_rpt NCBIfam 451 483
IPR002885 Pentatricopeptide_rpt NCBIfam 349 382
IPR002885 Pentatricopeptide_rpt NCBIfam 521 552
IPR002885 Pentatricopeptide_rpt NCBIfam 321 349
IPR002885 Pentatricopeptide_rpt NCBIfam 423 450
IPR002885 Pentatricopeptide_rpt NCBIfam 486 518
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 483 517
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 448 482
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 347 381
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR011990 TPR-like_helical_dom_sf Gene3D 301 409
IPR002885 Pentatricopeptide_rpt Pfam 424 448
IPR002885 Pentatricopeptide_rpt Pfam 450 479
IPR002885 Pentatricopeptide_rpt Pfam 219 245
IPR002885 Pentatricopeptide_rpt Pfam 246 291
IPR002885 Pentatricopeptide_rpt Pfam 346 395
IPR002885 Pentatricopeptide_rpt Pfam 482 531
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR011990 TPR-like_helical_dom_sf Gene3D 197 300
IPR011990 TPR-like_helical_dom_sf Gene3D 74 196
IPR011990 TPR-like_helical_dom_sf Gene3D 410 495
IPR011990 TPR-like_helical_dom_sf Gene3D 513 605
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 483 517
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 448 482
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 518 552
IPR011990 TPR-like_helical_dom_sf Gene3D 301 409
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 347 381
IPR002885 Pentatricopeptide_rpt Pfam 219 245
IPR002885 Pentatricopeptide_rpt Pfam 424 448
IPR002885 Pentatricopeptide_rpt Pfam 450 479
IPR002885 Pentatricopeptide_rpt Pfam 347 394
IPR002885 Pentatricopeptide_rpt Pfam 482 531
IPR002885 Pentatricopeptide_rpt Pfam 246 291
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 316 346
IPR002885 Pentatricopeptide_rpt TIGRFAM 248 281
IPR002885 Pentatricopeptide_rpt TIGRFAM 423 450
IPR002885 Pentatricopeptide_rpt TIGRFAM 321 349
IPR002885 Pentatricopeptide_rpt TIGRFAM 486 518
IPR002885 Pentatricopeptide_rpt TIGRFAM 521 552
IPR002885 Pentatricopeptide_rpt TIGRFAM 451 483
IPR002885 Pentatricopeptide_rpt TIGRFAM 349 382

No CAZYmes available for this sequence

No external refs found!