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  5. Seita.5G223700.1

Seita.5G223700.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017192 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017192_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G223700.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_234


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 1 100
IPR002885 Pentatricopeptide_rpt Pfam 279 326
IPR002885 Pentatricopeptide_rpt Pfam 418 465
IPR002885 Pentatricopeptide_rpt Pfam 348 397
IPR002885 Pentatricopeptide_rpt Pfam 558 597
IPR002885 Pentatricopeptide_rpt Pfam 208 256
IPR002885 Pentatricopeptide_rpt Pfam 2 47
IPR002885 Pentatricopeptide_rpt Pfam 489 537
IPR002885 Pentatricopeptide_rpt Pfam 105 151
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 384 418
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 524 558
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 34 68
IPR002885 Pentatricopeptide_rpt NCBIfam 42 69
IPR002885 Pentatricopeptide_rpt NCBIfam 527 560
IPR002885 Pentatricopeptide_rpt NCBIfam 457 489
IPR002885 Pentatricopeptide_rpt NCBIfam 352 385
IPR002885 Pentatricopeptide_rpt NCBIfam 72 97
IPR002885 Pentatricopeptide_rpt NCBIfam 110 138
IPR002885 Pentatricopeptide_rpt NCBIfam 2 35
IPR002885 Pentatricopeptide_rpt NCBIfam 562 594
IPR002885 Pentatricopeptide_rpt NCBIfam 422 455
IPR002885 Pentatricopeptide_rpt NCBIfam 211 244
IPR002885 Pentatricopeptide_rpt NCBIfam 142 172
IPR002885 Pentatricopeptide_rpt NCBIfam 316 349
IPR002885 Pentatricopeptide_rpt NCBIfam 492 524
IPR002885 Pentatricopeptide_rpt NCBIfam 246 280
IPR002885 Pentatricopeptide_rpt NCBIfam 386 420
IPR002885 Pentatricopeptide_rpt NCBIfam 281 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 244 278
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 209 243
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 454 488
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 279 313
IPR011990 TPR-like_helical_dom_sf Gene3D 341 434
IPR011990 TPR-like_helical_dom_sf Gene3D 435 538
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 105 139
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 1 33
IPR002885 Pentatricopeptide_rpt Pfam 72 97
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 559 593
IPR011990 TPR-like_helical_dom_sf Gene3D 271 340
IPR011990 TPR-like_helical_dom_sf Gene3D 550 603
IPR011990 TPR-like_helical_dom_sf Gene3D 101 167
IPR011990 TPR-like_helical_dom_sf Gene3D 168 262
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 349 383
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 140 174
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 419 453
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 489 523
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 105 139
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR002885 Pentatricopeptide_rpt TIGRFAM 246 280
IPR002885 Pentatricopeptide_rpt TIGRFAM 316 349
IPR002885 Pentatricopeptide_rpt TIGRFAM 562 594
IPR002885 Pentatricopeptide_rpt TIGRFAM 2 35
IPR002885 Pentatricopeptide_rpt TIGRFAM 527 560
IPR002885 Pentatricopeptide_rpt TIGRFAM 422 455
IPR002885 Pentatricopeptide_rpt TIGRFAM 42 69
IPR002885 Pentatricopeptide_rpt TIGRFAM 492 524
IPR002885 Pentatricopeptide_rpt TIGRFAM 110 138
IPR002885 Pentatricopeptide_rpt TIGRFAM 457 489
IPR002885 Pentatricopeptide_rpt TIGRFAM 352 385
IPR002885 Pentatricopeptide_rpt TIGRFAM 386 420
IPR002885 Pentatricopeptide_rpt TIGRFAM 281 314
IPR002885 Pentatricopeptide_rpt TIGRFAM 142 172
IPR002885 Pentatricopeptide_rpt TIGRFAM 211 244
IPR002885 Pentatricopeptide_rpt TIGRFAM 72 97
IPR002885 Pentatricopeptide_rpt Pfam 406 463
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 349 383
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 524 558
IPR011990 TPR-like_helical_dom_sf Gene3D 168 262
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 419 453
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 1 33
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 244 278
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 384 418
IPR011990 TPR-like_helical_dom_sf Gene3D 271 340
IPR011990 TPR-like_helical_dom_sf Gene3D 550 603
IPR011990 TPR-like_helical_dom_sf Gene3D 101 167
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 559 593
IPR033443 PPR_long Pfam 18 97
IPR011990 TPR-like_helical_dom_sf Gene3D 1 100
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 489 523
IPR011990 TPR-like_helical_dom_sf Gene3D 341 434
IPR011990 TPR-like_helical_dom_sf Gene3D 435 538
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 454 488
IPR002885 Pentatricopeptide_rpt Pfam 558 597
IPR002885 Pentatricopeptide_rpt Pfam 278 326
IPR002885 Pentatricopeptide_rpt Pfam 489 537
IPR002885 Pentatricopeptide_rpt Pfam 105 151
IPR002885 Pentatricopeptide_rpt Pfam 348 397
IPR002885 Pentatricopeptide_rpt Pfam 208 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 34 68
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 279 313
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 209 243
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 140 174

No CAZYmes available for this sequence

No external refs found!