Seita.5G257500.1

Description : zinc ion binding

Gene families : OG_01_0012625 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012625_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G257500.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_82

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003604	Matrin/U1-like-C_Znf_C2H2	SMART	91	125
IPR039999	LYAR	PANTHER	1	303
IPR036236	Znf_C2H2_sf	SUPERFAMILY	1	26
IPR013087	Znf_C2H2_type	Pfam	94	118
IPR036236	Znf_C2H2_sf	SUPERFAMILY	76	126
IPR014898	Znf_C2H2_LYAR	Pfam	30	57
IPR036236	Znf_C2H2_sf	SUPERFAMILY	30	58
IPR014898	Znf_C2H2_LYAR	Pfam	30	57
IPR036236	Znf_C2H2_sf	SUPERFAMILY	1	26
IPR003604	Matrin/U1-like-C_Znf_C2H2	SMART	91	125
IPR039999	LYAR	PANTHER	1	302
IPR036236	Znf_C2H2_sf	SUPERFAMILY	30	58
IPR036236	Znf_C2H2_sf	SUPERFAMILY	76	126

No CAZYmes available for this sequence

External Links

No external refs found!