Seita.5G262500.1

Description : vacuoleless1 (VCL1)

Gene families : OG_01_0004421 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004421_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G262500.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISM	GOs from InterProScan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007033	vacuole organization	ISM	GOs from InterProScan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR038132	Vps16_C_sf	Gene3D	758	854
IPR011044	Quino_amine_DH_bsu	SUPERFAMILY	164	391
IPR006925	Vps16_C	Pfam	621	941
IPR016534	VPS16	PANTHER	87	954
IPR006926	Vps16_N	Pfam	140	525
IPR016534	VPS16	PIRSF	88	958
IPR011044	Quino_amine_DH_bsu	SUPERFAMILY	164	391
IPR016534	VPS16	PIRSF	88	958
IPR006926	Vps16_N	Pfam	140	525
IPR016534	VPS16	PANTHER	87	953
IPR006925	Vps16_C	Pfam	621	941
IPR038132	Vps16_C_sf	Gene3D	758	854

No CAZYmes available for this sequence

External Links

No external refs found!