Seita.5G274300.1

Description : DNA LIGASE 6

Gene families : OG_01_0009638 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009638_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G274300.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	ISM	GOs from InterProScan
MF	GO:0003910	DNA ligase (ATP) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006310	DNA recombination	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071897	DNA biosynthetic process	ISM	GOs from InterProScan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036599	DNA_ligase_N_sf	Gene3D	742	1013
IPR011084	DRMBL	Pfam	277	381
IPR012308	DNA_ligase_ATP-dep_N	Pfam	765	941
IPR012309	DNA_ligase_ATP-dep_C	Pfam	1256	1362
IPR012310	DNA_ligase_ATP-dep_cent	ProSiteProfiles	1122	1268
IPR012310	DNA_ligase_ATP-dep_cent	Pfam	1011	1230
IPR015940	UBA	ProSiteProfiles	643	685
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	59	380
IPR012340	NA-bd_OB-fold	Gene3D	1235	1392
IPR001279	Metallo-B-lactamas	SMART	51	217
IPR000977	DNA_ligase_ATP-dep	NCBIfam	823	1381
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	58	379
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1238	1383
IPR016059	DNA_ligase_ATP-dep_CS	ProSitePatterns	1035	1043
IPR036599	DNA_ligase_N_sf	SUPERFAMILY	745	993
IPR000977	DNA_ligase_ATP-dep	TIGRFAM	823	1381
IPR012309	DNA_ligase_ATP-dep_C	Pfam	1256	1364
IPR012308	DNA_ligase_ATP-dep_N	Pfam	765	941
IPR036599	DNA_ligase_N_sf	Gene3D	742	1013
IPR016059	DNA_ligase_ATP-dep_CS	ProSitePatterns	1035	1043
IPR036599	DNA_ligase_N_sf	SUPERFAMILY	745	993
IPR001279	Metallo-B-lactamas	SMART	51	217
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1238	1383
IPR011084	DRMBL	Pfam	277	382
IPR012310	DNA_ligase_ATP-dep_cent	Pfam	1011	1230
IPR015940	UBA	ProSiteProfiles	643	685
IPR012310	DNA_ligase_ATP-dep_cent	ProSiteProfiles	1122	1268
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	58	379
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	59	380

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.5G274300.1

Expression Profile

Co-expression Networks

Functional Annotation