Seita.5G334400.1

Description : Transcription initiation factor IIF, beta subunit

Gene families : OG_01_0007574 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007574_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G334400.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005674	transcription factor TFIIF complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006366	transcription by RNA polymerase II	ISM	GOs from InterProScan
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003196	TFIIF_beta	PANTHER	4	283
IPR040450	TFIIF_beta_HTH	Pfam	215	278
IPR011039	TFIIF_interaction	SUPERFAMILY	3	60
IPR040504	TFIIF_beta_N	Pfam	15	163
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	213	279
IPR011039	TFIIF_interaction	SUPERFAMILY	91	145
IPR036388	WH-like_DNA-bd_sf	Gene3D	213	280
IPR036388	WH-like_DNA-bd_sf	Gene3D	213	280
IPR011039	TFIIF_interaction	SUPERFAMILY	3	60
IPR011039	TFIIF_interaction	SUPERFAMILY	91	145
IPR040504	TFIIF_beta_N	Pfam	15	160
IPR040450	TFIIF_beta_HTH	Pfam	215	278
IPR003196	TFIIF_beta	PANTHER	1	65
IPR003196	TFIIF_beta	PANTHER	87	287
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	213	279

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.5G334400.1

Expression Profile

Co-expression Networks

Functional Annotation