Seita.5G358200.1

Description : Radical SAM superfamily protein

Gene families : OG_01_0006067 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006067_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G358200.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0004076	biotin synthase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006768	biotin metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009102	biotin biosynthetic process	ISM	GOs from InterProScan
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	None	Extended
MF	GO:0016783	sulfurtransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013785	Aldolase_TIM	Gene3D	47	359
IPR007197	rSAM	ProSiteProfiles	81	310
IPR002684	Biotin_synth/BioAB	Hamap	48	358
IPR006638	Elp3/MiaA/NifB-like_rSAM	SMART	86	294
IPR007197	rSAM	Pfam	91	253
IPR002684	Biotin_synth/BioAB	PANTHER	28	383
IPR002684	Biotin_synth/BioAB	NCBIfam	49	355
IPR024177	Biotin_synthase	PIRSF	31	364
IPR010722	BATS_dom	Pfam	265	355
IPR024177	Biotin_synthase	SFLD	46	362
IPR010722	BATS_dom	SMART	265	357
IPR006638	Elp3/MiaA/NifB-like_rSAM	SMART	86	294
IPR007197	rSAM	Pfam	93	251
IPR002684	Biotin_synth/BioAB	Hamap	48	358
IPR013785	Aldolase_TIM	Gene3D	47	359
IPR024177	Biotin_synthase	SFLD	46	362
IPR024177	Biotin_synthase	PIRSF	31	364
IPR010722	BATS_dom	SMART	265	357
IPR002684	Biotin_synth/BioAB	PANTHER	27	370
IPR010722	BATS_dom	Pfam	265	355
IPR002684	Biotin_synth/BioAB	TIGRFAM	57	355
IPR007197	rSAM	ProSiteProfiles	81	310

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.5G358200.1

Expression Profile

Co-expression Networks

Functional Annotation