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Description : pumilio 1
Gene families : OG_01_0009848 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009848_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G379000.1 | |
| Cluster | Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 757 | 792 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 721 | 756 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 839 | 863 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 907 | 939 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 988 | 1015 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 761 | 794 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 869 | 904 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 725 | 759 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 797 | 830 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 942 | 976 |
| IPR012940 | NABP | Pfam | 311 | 720 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 704 | 1038 |
| IPR011989 | ARM-like | Gene3D | 701 | 1047 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 829 | 864 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 902 | 937 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 793 | 828 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 974 | 1015 |
| IPR033133 | PUM-HD | ProSiteProfiles | 701 | 1041 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 865 | 900 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 829 | 864 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 865 | 900 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 938 | 973 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 721 | 756 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 757 | 792 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 980 | 1015 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 902 | 937 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 793 | 828 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 938 | 973 |
| IPR033712 | Pumilio_RNA-bd | CDD | 716 | 1037 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 793 | 828 |
| IPR012940 | NABP | Pfam | 311 | 720 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 938 | 973 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 757 | 792 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 902 | 937 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 704 | 1038 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 974 | 1015 |
| IPR033712 | Pumilio_RNA-bd | CDD | 716 | 1037 |
| IPR011989 | ARM-like | Gene3D | 701 | 1047 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 721 | 756 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 761 | 794 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 869 | 904 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 907 | 939 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 797 | 830 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 725 | 759 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 942 | 976 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 840 | 863 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 988 | 1015 |
| IPR033133 | PUM-HD | ProSiteProfiles | 701 | 1041 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 865 | 900 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 829 | 864 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 829 | 864 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 865 | 900 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 938 | 973 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 757 | 792 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 721 | 756 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 980 | 1015 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 902 | 937 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 793 | 828 |
No CAZYmes available for this sequence
| No external refs found! |