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  5. Seita.5G388400.1

Seita.5G388400.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0005294 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005294_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G388400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_155


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006283 transcription-coupled nucleotide-excision repair ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 391 423
IPR001680 WD40_rpt ProSiteProfiles 99 141
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 426
IPR042238 Rad28/ERCC8/Ckn1/ATCSA-1 PANTHER 1 451
IPR001680 WD40_rpt Pfam 182 219
IPR001680 WD40_rpt Pfam 305 336
IPR001680 WD40_rpt Pfam 99 132
IPR001680 WD40_rpt Pfam 389 423
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 41 429
IPR019775 WD40_repeat_CS ProSitePatterns 206 220
IPR020472 G-protein_beta_WD-40_rep PRINTS 119 133
IPR020472 G-protein_beta_WD-40_rep PRINTS 323 337
IPR020472 G-protein_beta_WD-40_rep PRINTS 206 220
IPR001680 WD40_rpt SMART 179 219
IPR001680 WD40_rpt SMART 135 176
IPR001680 WD40_rpt SMART 92 132
IPR001680 WD40_rpt SMART 34 73
IPR001680 WD40_rpt SMART 384 423
IPR001680 WD40_rpt SMART 297 336
IPR001680 WD40_rpt ProSiteProfiles 186 228
IPR019775 WD40_repeat_CS ProSitePatterns 323 337
IPR001680 WD40_rpt ProSiteProfiles 304 345
IPR001680 WD40_rpt ProSiteProfiles 186 228
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 41 429
IPR001680 WD40_rpt ProSiteProfiles 304 345
IPR001680 WD40_rpt Pfam 388 423
IPR001680 WD40_rpt Pfam 182 219
IPR001680 WD40_rpt Pfam 305 336
IPR019775 WD40_repeat_CS ProSitePatterns 206 220
IPR019775 WD40_repeat_CS ProSitePatterns 323 337
IPR001680 WD40_rpt ProSiteProfiles 99 141
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 426
IPR001680 WD40_rpt SMART 179 219
IPR001680 WD40_rpt SMART 135 176
IPR001680 WD40_rpt SMART 92 132
IPR001680 WD40_rpt SMART 34 73
IPR001680 WD40_rpt SMART 384 423
IPR001680 WD40_rpt SMART 297 336
IPR001680 WD40_rpt ProSiteProfiles 391 423
IPR042238 Rad28/ERCC8/Ckn1/ATCSA-1 PANTHER 1 451
IPR020472 G-protein_beta_WD-40_rep PRINTS 119 133
IPR020472 G-protein_beta_WD-40_rep PRINTS 323 337
IPR020472 G-protein_beta_WD-40_rep PRINTS 206 220

No CAZYmes available for this sequence

No external refs found!