Seita.5G399600.1

Description : nuclear RNA polymerase D1A

Gene families : OG_01_0003420 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003420_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.5G399600.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007080	RNA_pol_Rpb1_1	Pfam	256	500
IPR006592	RNA_pol_N	SMART	448	737
IPR007066	RNA_pol_Rpb1_3	Pfam	712	862
IPR000722	RNA_pol_asu	Pfam	551	708
IPR042102	RNA_pol_Rpb1_3_sf	Gene3D	717	856
IPR038120	Rpb1_funnel_sf	Gene3D	896	1034
IPR007083	RNA_pol_Rpb1_4	Pfam	927	984
IPR045867	DNA-dir_RpoC_beta_prime	PANTHER	227	1484
IPR044893	RNA_pol_Rpb1_clamp_domain	Gene3D	220	331
IPR040403	NRPD1_N	CDD	237	1081
IPR007083	RNA_pol_Rpb1_4	Pfam	928	986
IPR007080	RNA_pol_Rpb1_1	Pfam	256	500
IPR006592	RNA_pol_N	SMART	448	737
IPR045867	DNA-dir_RpoC_beta_prime	PANTHER	216	1550
IPR044893	RNA_pol_Rpb1_clamp_domain	Gene3D	220	331
IPR000722	RNA_pol_asu	Pfam	551	708
IPR007066	RNA_pol_Rpb1_3	Pfam	712	862
IPR040403	NRPD1_N	CDD	237	1081
IPR038120	Rpb1_funnel_sf	Gene3D	896	1034
IPR042102	RNA_pol_Rpb1_3_sf	Gene3D	717	856

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.5G399600.1

Expression Profile

Co-expression Networks

Functional Annotation